This article analyzes the main security issues in digital logistics systems and the methods to eliminate them. The widespread adoption of digital technologies in logistics has made information security, unauthorized access, data confidentiality, and continuity highly relevant. The study examines existing threats, their impacts, and modern protection technologies, including cryptographic methods, access control systems, firewalls, SIEM systems, and other advanced solutions. The research demonstrates that ensuring the stability and reliability of digital infrastructure is crucial for effective logistics operations.